QIIME 2 is a microbiome bioinformatics platform to analyze amplicon sequence data. The installation instructions below assume that you have already installed Miniconda.

Linux/WSL

  • In your Terminal (on Windows, switch to WSL), download the configuration file for a Conda environment that also contains QIIME 2

    curl -sL \
      "https://data.qiime2.org/distro/core/qiime2-2020.8-py36-linux-conda.yml" > \
      "qiime2.yml"

macOS

  • In your Terminal, download the configuration file for a Conda environment that also contains QIIME 2

    curl -sL \
      "https://data.qiime2.org/distro/core/qiime2-2020.8-py36-osx-conda.yml" > \
      "qiime2.yml"

Resources